Thursday, April 26, 2012

Study notes unit 2



Protein Synthesis

Protein synthesis occurs in both the ribosomes and the nucleus. Step 1 the DNA unwinds and unzips because the mRNA needs it to make a copy. The DNA is like a template that RNA uses. This is the process known as transcription. The DNA code determines the order of the mRNA nucleotides. The mRNA copies the DNA. mRNA then leaves the nucleus and heads towards a ribosome, where translation is about to occur. In translation the mRNA attaches to the ribosome and the tRNA brings the amino acids. The amino acids bond together to begin making the new protein. The ribosome can only hold two tRNA at a time. The mRNA dictates which tRNA and amino acids arrive at the ribosome. Thousands of amino acids bond together to form a chain, which is the new protein. When the protein is constructed the mRNA releases the the stop codon and then the protein is released from the ribosome

The information in the mRNA base sequence is in a triplet code. Each three letter unit of the molecule is called a codon. So a specific sequence produces a specific amino acids

Two examples of environmental mutagens that can cause mutation in humans are Ultraviolet radiation and X rays.

In the mutation due to X-Rays, it can break the backbone of the DNA molecule. Special enzymes will repair the break but the spliced segment may not be returned to the right position. The misplaced segment can alter all of the genetic information.

Transport Across Cell Membrane

Glycolipid- consists of a carbohydrate chain and a lipid. They provide the cell with a self recognition marker.
Glycoprotein (or recognition protein)- consists of a carbohydrate chain and a protein. Serve as cell surface attachment sites.
Phospholipids- main structural component of the membrane, isolates the cell's cytoplasm from the exterior.
Cholesterol- lipid found embedded within the plasma membrane, makes the bilayer stronger and more flexible, makes the membrane less permeable.
Carbohydrate- may attach to parts of the membrane (forming glycolipids or glycoproteins) and can act as receptor sites.
Receptor Protein- molecular triggers that set off cellular responses when specific molecules in the extracellular fluid bind to them (have a binding site).
The cell membrane is described as "selectively permeable" because the membrane can choose what it allows to enter and exit the cell. For example the membrane can choose to allow water but not chemicals into the cell.
Diffusion and osmosis are passive. This means that they do not require any energy input. Diffusion is the movement of a substance from an area of high concentration to an area of low concentration.An example of diffusion is putting sugar into a cup of water. The sugar will disolve slowly into the water.
Osmosis involves the movement of water. In osmosis, water is the only thing that moves. Osmosis requires a membrane that is semi-permeable so it can enter or exit a cell. Facilitated transport is also passive, in which material are moved across the plasma membrane by a transport protein from high concentration to low concentration. But it does not require energy. Active transport is the movement of a substance up a concentration gradient through a selectively permeable membrane us ATP, which is energy. Which means in active transport it moves something from low concentration to high concentration
Size: Small molecules can slip by the polar heads of the phospholipids and through the membrane to the other side. Oxygen gas, carbon diozide and water can move in this manner. Very large molecules like protein cannnot diffuse across the cell membrane
Surface area: The more surface area a cell has, it's ability to absorb what it needs and wants increases. So that the rate of diffusion increases, hence why it is better for a cell to have more surface area then to have more volume.
Temperature: temperature affects the rate of diffusion also, increases in temperature cause all of the molecules to move faster, hence why the rate of diffusion will increase. But if the temperature decreases the rate of diffusion will also decrease because the molecules will not be moving as fast.
Endocytosis is the process of taking particles into the cell by engulfing it as part of the cell membrane. Phagocytosis and pinocytosis are types of endocytosis (movement of particles into the cell), phagocytosis is the intake of solid particles by a cell and pinocytosis is the intake of liquid particles by a cell
Exocytosis is the movement of large amounts of material out of the cells using a vesicle
A hypotonic enviroment will cause water to move into the cell. Without the protection of a cell wall though, the animal cell will burst
A hypertonic environment will cause water to move out of the cell causing the cell to shrink in size.
isotonic environment will cause no net movement of water
The surface area affects cells greatly. If cells want to survive the increase their surface area by becoming smaller cells. The more surface area a cell has the faster the diffusion rate. The more volume that a cell has the smaller the surface area the>slower diffusion rate>less likely to survive.

Enzymes

Metabolism-The chemical processes that occurs within a living organism in order to maintain life
enzymes- Enzymes allow many chemical reactions to occur within the homeostasis constraints of a living system. Enzymes function as organic catalysts. A catalyst is a chemical involved in, but not changed by, a chemical reaction. Many enzymes function by lowering the activation energy of reactions.
Substrate-A reactant is a substance that participates in a reaction] the reactants in an enzymatic reaction are called the substrates for that enzyme
Coenzymes-Many enzymes require a nonprotein cofactor to assist them in carrying out their function. Coenzymes are cofactors that consist of organic molecules that bind to enzymes and serve as carriers for chemical groups or electrons. The protein portion of the enzyme accounts for its specificity and the coenzyme portion of the enzyme participates in the reaction. A coenzyme is generally a large molecule that the body is incapable of synthesizing without the ingestion of a vitamin.
Activation Energy-The term activation energy refers to the minimum amount of energy required for a chemical reaction to occur
The active site if where the enzyme and substrate fit together, seemingly like a key fits a lock. The active site undergoes a slight change in shape in order to accommodate the substrate. This is called induced fit model because the enzyme is induced to undergo a slight alteration to achieve optimum fit. 
 Enzyme activity increases as substrate concentration increases because there are more collisions between substrate molecules and the enzyme. As more molecules fill active sites, more product results per unit time. 
As temperature rises, enzyme activity increases. This occurs because higher temperature causes more effective collisions between enzyme and substrate. If the temperature rises beyond a certain point, enzyme activity eventually levels out and then declines rapidly because the enzyme denatured. An enzyme's shape changes during denaturation, and then it can no longer bind its substrate efficiently. 
Since enzymes are specific, a cell regulates which enzymes are present and / or active at any one time. Enzymes may be present that are not needed, or one pathway may negate the work of another pathway. Genes must be turned on to increase the concentration of an enzyme and turned off to decrease the concentration of an enzyme. 
Many enzymes require an inorganic ion or organic but non protein molecule to function properly; these necessary ions or molecules are called cofactors. The inorganic ions are metals such as copper, zinc, or iron. The organic, nonprotein molecules are called coenzymes. 
The thyroid glad is composed of a large number of follicles, each a small spherical structure made of thyroid cells filled with truuodothryronine (T3), which contains three iodine atoms, and thyroxine (T4), which contains four iodine atoms. To produce thyroxine and triiodothyronine, the thyroid gland actively acquired iodine. 
Vitamins are organic compounds that the body uses for metablic purposes but is unable to produce in adequate quantity. Many vitamins are portions of coenzymes, which are enzyme helpers. Coenzymes are needed in only small amounts because each can be used over and over again.

Tuesday, April 24, 2012

My mark

I feel that my mark is very low and I am disappointed in myself. I believe I can get a better mark on the next test which will bring my mark up. Furthermore, reason my mark is very low is because I am missing some assignments for example the study notes which have not been posted on my blog. For improvements I can study harder and post the blog posts on time, which can increase my marks. I expect for myself to do better on the next test.

Thursday, April 5, 2012


Glycolipid- consists of a carbohydrate chain and a lipid. They provide the cell with a self recognition marker.
Glycoprotein (or recognition protein)- consists of a carbohydrate chain and a protein. Serve as cell surface attachment sites.
Phospholipids- main structural component of the membrane, isolates the cell's cytoplasm from the exterior.
Cholesterol- lipid found embedded within the plasma membrane, makes the bilayer stronger and more flexible, makes the membrane less permeable.
Carbohydrate- may attach to parts of the membrane (forming glycolipids or glycoproteins) and can act as receptor sites.
Receptor Protein- molecular triggers that set off cellular responses when specific molecules in the extracellular fluid bind to them (have a binding site).
Transport Protein- carriers that use energy (ATP) to move substances across the membrane, either on it's own, or in a vesicle.

Friday, March 30, 2012

Study notes

Cell compounds
Water Contains a Polar Covalent Bond which leads to an uneven sharing of electrons. Which creates the oxygen atom to become slightly electronegative while the two hydrogens become slightly electro positive. Which  causes an attraction between a positive hydrogen and a negative oxygen of two water molecules a bond is formed known as a hydrogen bond
water is known to be the universal solvent and only substances dissolved in water can enter cells. It can also carry away dissolved waste. Ions can be dissolved in water. Water also regulates temperature in living organisms tries to maintain constant temperature. Water also acts as a lubricant in joints with high surface tension
A molecule that is acidic has more H+ for example H CL which is on the pH scale of 0-7. While when a molecule that has more OH- is basic and reads 7-14 on the pH scale. Buffers are compounds that help maintain pH levels by either releasing or accepting H+ ions. Buffers are important to keep a cell cytoplasm and also maintain the blood at a neutral level around 7.4
Biological Molecules
Organic molecules contain Carbon and dehydration synthesis creates monomer to link to make polymers, then water (H2O) is created. Hydrolysis is the opposite of dehydration synthesis, which large polymers breakdown back into monomers and water is used
Proteins have 4 different structures. Proteins contain many amino acids which are different from the rest. Carbohydrates are sugars and are formed of hydrogen, carbon and hydroxide and dimers can be linked through an Ester linkage. Lipids are fatty acids, phospholipids, triglyceride and steroids. Fatty acids are long chains of carbon with hydrogen attached ending in an acid group. Phospholipids have trails that are hydrophobic and heads that are hydrophilic. Nucleic acids contain complimentary base pairing where A-T, G-C and DNA forms a double helix.
The empirical formula or simplest form of any carbohydrate is CH2O. It appears as a carbon water. This formula tells us carbohydrates are made out of carbon, hydrogen and oxygen.
Monosaccharides are a single sugar molecule or simple sugar ex: glucose and triose. Building blocks for more complex molecules. Disaccharides are monomers linked through an Ester linkage, provides short term energy storage. Poly saccharides are many sugars formed together

Starch is a fairly straight chain of glucose.
Glycogen is a highly branched strain of glucose.
Cellulose is an undigestable fairly straight chain of glucose where the glucose linkage alternates.
Carbohydrates are a major source of energy and are a component of many more complex molecules.
Saturated fats have no double bonds between carbons where carbons are saturated with hydrogens. Unsaturated fats have double bonds between carbons.
Neutral Fats act as energy storage and are found in the thighs and torso. Steroids are sometimes chemical messengers found in every cell of your body and form many hormones. Phospholipids form an important part of cell membrane and are found in all cells.
Primary structure is straight a line of amino acids, a secondary structure has a spiral or helix shape, tertiary structures are an alpha helix shape folded into an irregular shape, and a quaternary is made up of two or more polypeptides.
The major functions of proteins are structure in cartilage, bone, muscle cells, etc.,  Enzyme, Immunity against foreign invaders, Hormones, and transport.
ATP has three phosphate groups. During hydrolysis, a special enzyme will remove a phosphate molecule from ATP. This releases energy that the cell can use in order to carry out its processes. 




Cell Structure



Cell Membrane -Bilipid layer of phospholipids and cholesterol. Regulates what goes in and out of a cell and protects the cell.
Ribosomes -protein synthesizers. They create amino acid chains with the instruction of the mRNA
Vesicle -used for transportation. Liquid filled membrane bound sack.
Lysosome -digest worn out organelles and cell debris; play a role in cell death. Contain digestive enzymes
Nucleus -controls all cell activites and contains the cells chromosomes and genetic information.
Chromosomes -Double stranded DNA molecules in nucleus. Genetic blueprint in bases. Cell division, RNA transcription.
Smooth Endoplasmic Reticulum -acts as a storage organelle and is important in the creation and storage of steroids
Mitochondria -provides atp through cellular respiration
Golgi Apparatus -stacks of flattened vesicles. Packages proteins for export from the cell, the "post office" of the cell
Vacuole -used for storage
Nuclear envelope - Double membrane, protects nuclear contents, allows communication with cell via RNA.
Nucleolus -assembles ribosomes, site of genes for RNA synthesis
Rough Endoplasmic Reticulum -assist in the synthesis and packaging of proteins, studded with ribosomes

The Cell structures work together to create proteins through protein synthesis and all cell structure play a part: template>copier>attachment>creation of protein> storage
In blog post previously
DNA
DNA takes the shape of a double helix through neucleotides with attach sugar, phosphates and bases in chains. The bases are complementary base pairing where they alternate and hydrogen bonds form between the base pair to connect them.
Step 1 DNA unzips H bonds break enzymes. Step2 complimentary base pairing on to template. Step 3 joining of adjacent nucleotide through bonds between sugars and phosphates
Recombinant DNA is calculated manipulation of DNA. These cells can synthesize proteins encoded into newly introduced genes
What are the uses for recombinant DNA? Gene Regulation to develop products such as human hormones.Genetic Engineering to synthesize insulin from bacterial cells. Also, to create disease resistant plants for food
DNA is a double helix wher A=T, C=G while RNA is a single strang where U replaces T. They both contain complementary base pairing. DNA creates a template and RNA copies it and takes it to the ribosomes.





Sunday, March 25, 2012


The mitochondria is the site of cellular respiration. Cellular respiration is the process of converting chemical energy into ATP . The chemical energy is produced through photosynthesis and then goes through a chemical reaction to become ATP.